Clinical UM Guideline |
Subject: Cell-Free Fetal DNA-Based Prenatal Testing | |
Guideline #: CG-GENE-21 | Publish Date: 04/12/2023 |
Status: Reviewed | Last Review Date: 02/16/2023 |
Description |
This document addresses cell-free fetal DNA-based prenatal testing (non-invasive prenatal testing [NIPT]) for fetal aneuploidies (including fetal sex chromosome aneuploidies), fetal sex determination, microdeletions, single-gene disorders and twin zygosity.
For additional information, please refer to:
Clinical Indications |
Note: Genetic counseling should be a component of a decision to perform genetic testing.
Medically Necessary:
Cell-free fetal DNA-based prenatal screening for fetal aneuploidy (trisomy 13, 18, and 21) is considered medically necessary for women with a current single or twin gestation pregnancy.
Cell-free fetal DNA-based prenatal testing for fetal sex determination is considered medically necessary for singleton pregnancies at increased risk of a sex (X)-linked condition or congenital adrenal hyperplasia.
Not Medically Necessary:
Cell-free fetal DNA-based prenatal screening for fetal aneuploidy (trisomy 13, 18, 21) is considered not medically necessary for individuals not meeting the criteria above, including pregnancies involving 3 or more fetuses.
Cell-free fetal DNA-based prenatal screening for fetal aneuploidy (trisomy 13, 18, and 21) in twin pregnancies is considered not medically necessary when the current pregnancy is affected by fetal demise, vanishing twin, or one or more anomaly detected in one or both of the twins.
Cell-free fetal DNA-based prenatal testing for fetal sex determination is considered not medically necessary for pregnancies without an increased risk of a sex (X)-linked condition or congenital adrenal hyperplasia.
Cell-free fetal DNA-based prenatal testing is considered not medically necessary for all other indications, including testing for microdeletion syndromes, single-gene disorders or to determine twin zygosity.
Coding |
The following codes for treatments and procedures applicable to this guideline are included below for informational purposes. Inclusion or exclusion of a procedure, diagnosis or device code(s) does not constitute or imply member coverage or provider reimbursement policy. Please refer to the member's contract benefits in effect at the time of service to determine coverage or non-coverage of these services as it applies to an individual member.
Fetal aneuploidy testing
When services are Medically Necessary:
CPT |
|
81420 | Fetal chromosomal aneuploidy (eg, trisomy 21, monosomy X) genomic sequence analysis panel, circulating cell-free fetal DNA in maternal blood, must include analysis of chromosomes 13, 18, and 21 |
81507 | Fetal aneuploidy (trisomy 21, 18, and 13) DNA sequence analysis of selected regions using maternal plasma, algorithm reported as a risk score for each trisomy |
81479 | Unlisted molecular pathology procedure [when specified as cell-free fetal DNA-based prenatal testing for fetal aneuploidy] |
81599 | Unlisted multianalyte assay with algorithmic analysis [when specified as cell-free fetal DNA-based prenatal testing involving multianalyte assays and an algorithmic analysis for fetal aneuploidy] |
0327U | Fetal aneuploidy (trisomy 13, 18, and 21), DNA sequence analysis of selected regions using maternal plasma, algorithm reported as a risk score for each trisomy, includes sex reporting, if performed |
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ICD-10 Diagnosis | |
| All single gestation pregnancy diagnoses |
O30.001-O30.099 | Twin pregnancy |
When services are Not Medically Necessary:
For the procedure codes listed above for the following diagnosis codes, or when the code describes a procedure designated in the Clinical Indications section as not medically necessary.
ICD-10 Diagnosis | |
O30.101-O30.93 | Multiple gestation (triplet and greater pregnancies) |
O31.00X0-O31.8X99 | Complications specific to multiple gestation (twin and greater pregnancies) |
Fetal sex determination testing
hen services may be Medically Necessary when criteria are met:
CPT |
|
81479 | Unlisted molecular pathology procedure [when specified as cell-free fetal DNA-based prenatal testing for fetal sex determination] |
81599 | Unlisted multianalyte assay with algorithmic analysis [when specified as cell-free fetal DNA-based prenatal testing involving multianalyte assays and an algorithmic analysis for fetal sex determination] |
|
|
ICD-10 Diagnosis | |
| All single gestation pregnancy diagnoses |
When services are Not Medically Necessary:
For the procedure codes listed above when criteria are not met for single gestation pregnancies and for the following diagnoses
ICD-10 Diagnosis | |
O30.001-O30.099 | Twin pregnancy |
O30.101-O30.93 | Multiple gestation (triplet and greater pregnancies) |
O31.00X0-O31.8X99 | Complications specific to multiple gestation (twin and greater pregnancies) |
Other testing
When services are Not Medically Necessary:
CPT |
|
81422 | Fetal chromosomal microdeletion(s) genomic sequence analysis (eg, DiGeorge syndrome, Cri-du-chat syndrome), circulating cell-free fetal DNA in maternal blood |
81479 | Unlisted molecular pathology procedure [when specified as cell-free fetal DNA-based prenatal testing of the genome for other chromosomal abnormalities, for single gene disorders, or for twin zygosity determination] |
0060U | Twin zygosity, genomic targeted sequence analysis of chromosome 2, using circulating cell-free fetal DNA in maternal blood |
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|
ICD-10 Diagnosis | |
| All diagnoses |
Discussion/General Information |
Prenatal Aneuploidy Testing for Trisomy 13, 18 and 21
Noninvasive cell-free fetal DNA-based screening for fetal aneuploidy is considered as an acceptable screening option for fetal aneuploidy (trisomy 13, 18 and 21) in average-risk women carrying a single gestation. The International Society for Prenatal Diagnosis (ISPD) considers cell-free fetal DNA screening as a primary test for all pregnant women an appropriate testing protocol option (Benn, 2015). The European Society of Human Genetics (ESHG) and the American Society of Human Genetics (ASHG) concluded that “NIPT has the potential of helping the practice better achieve its aim of facilitating autonomous reproductive choices, provided that balanced pretest information and non-directive counseling are available as part of the screening offer” (Dondorp, 2015).
The American College of Obstetricians and Gynecologists (ACOG) provides the following summary with regards to non-invasive screening for fetal aneuploidy:
The wide variety of screening test options, each offering varying levels of information and accuracy, has resulted in the need for complex counseling by the health care provider and complex decision making by the patient. No one screening test is superior to other screening tests in all test characteristics. Each test has relative advantages and disadvantages. It is important that obstetrician–gynecologists and other obstetric care providers be prepared to discuss not only the risk of aneuploidy but also the benefits, risks, and limitations of available screening tests. Screening for aneuploidy should be an informed patient choice, with an underlying foundation of shared decision making that fits the patient’s clinical circumstances, values, interests, and goals” (ACOG, 2016[b])
The American College of Medical Genetics and Genomics (ACMG) issued a strong recommendation for the use of NIPT over traditional methods to screen for fetal trisomies 13, 18, and 21 in pregnant individuals with singleton and twin gestation pregnancies (strong recommendation, high certainty of evidence). The ACMG also affirmed the importance of providing patients with up-to-date, accurate, and balanced information and personalized, patient-centered counseling (Dugan, 2022).
Noninvasive cell-free fetal DNA-based screening for fetal aneuploidy in women with a single gestation pregnancy, is in accordance with generally accepted standards of medical practice. For additional information on cell-free fetal DNA testing for aneuploidy in women with a multiple gestation pregnancy, see section below on “Multiple Gestations”.
Other Aneuploidies
With regard to massively parallel sequencing (MPS), the National Society of Genetic Counselors (NSGC) states that while there are clinical studies demonstrating the ability of MPS to detect abnormalities in chromosomes 13, 18 and 21:
NIPT has not yet been proven efficacious in detecting other chromosomal abnormalities or single-gene disorders. NSGC recommends that pretest counseling for NIPT include information about the disorders that it may detect, its limitations in detecting these conditions, and its unproven role in detecting other conditions (Devers, 2013).
The ESHG and the ASHG released a joint statement advising against the use of cell-free DNA for conditions apart from trisomy 21, trisomy 18, and trisomy 13. According to the ESHG/ASHG:
Depending on targeted or non-targeted analysis and on the level of resolution, NIPT for common autosomal aneuploidies may lead to findings of abnormalities in other chromosomes, including submicroscopic abnormalities. Ideally, there should be a fit between the range of abnormalities for which the screening is offered and accepted and the scope of the test used to find those conditions. Women or couples may otherwise be confronted with outcomes requiring them to make decisions that they were not sufficiently prepared for. These decisions can be especially difficult when conditions are mild or highly variable or when health implications are otherwise uncertain. This is not a new problem: such findings also emerge at follow-up testing after a positive cFTS (see previous section). However, at the NIPT stage, they precede decision making about invasive testing, which may entail putting the pregnancy at risk for confirming findings that not only have a low PPV (because of their low frequency), but that, if confirmed, may still have highly uncertain implications for the health of the future child (Dondorf, 2015).
The ACMG has indicated that noninvasive prenatal screening using cell-free fetal DNA should not be used to screen for autosomal aneuploidies other than those involving chromosomes 13, 18, and 21 (Gregg, 2016).
Similarly, the 2020 ACOG Practice Bulletin on “Screening for Fetal Chromosomal Abnormalities”, provides the following recommendation with regards to testing for aneuploidies other than abnormalities in chromosomes 13, 18 and 21
“In addition to screening for the common aneuploidies, some laboratories offer testing for other aneuploidies such as trisomy 16 and trisomy 22, microdeletion testing, and genome-wide screening of large copy number changes. Nonmosaic fetal trisomy 16 or 22 is associated with a nonviable gestation. Mosaic trisomy 16 and 22 can be associated with fetal survival; however, screening is not recommended because the screening accuracy with regard to detection and the false-positive rate is not established” (Rose, 2020).
At the current time the use of cell-free fetal DNA to screen for aneuploidies other than trisomy 3, 18 and 21 is not considered standard of care in the practicing medical community.
Multiple Gestations
Gil and colleagues (2019) reported on the clinical implementation of cell-free DNA analysis of maternal blood for trisomies 21, 18 and 13 in twin pregnancy, and further explored the performance of the test by combining their results with those identified in a systematic review of the literature. The prospective study population included self-referred females and females selected for cell-free DNA testing following routine first-trimester combined screening from a single medical facility in London. EMBASE, MEDLINE, CENTRAL, ClinicalTrials.gov and World Health Organization International Clinical Trials Registry Platform were employed to identify peer-reviewed publications on clinical validation of cell-free DNA for trisomies 13, 18 and 21 in twin pregnancies. By utilizing the authors’ data set of 997 twin pregnancies and those from the literature search which included seven relevant studies, a meta-analysis was conducted. Cell-free DNA correctly identified 16/17 (94.1%) of trisomy 21; 9/10 (90%) of trisomy 18; 1/2 (50%) of trisomy 13 and 962/968 (99.4%) of those with no trisomies. After combining the authors’ data set with those reported in the literature search, a total of 56 trisomy 21 and 3718 non-trisomy 21 twin pregnancies were identified. The pooled detection rate and false-positive rate was 98.2% (95% confidence interval [CI], 83.2-99.8%) and 0.05% (95% CI, 0.01-0.26%), respectively. For the 18 cases of trisomy 18 and the 3143 non-trisomy 18 pregnancies, the pooled detection rate and false-positive rate were 88.9% (95% CI, 64.8-97.2%) and 0.03% (95% CI, 0.00-0.33%), respectively. Of only 3 cases of trisomy 13, 2 (66.7%) were detected by cell-free DNA with a false-positive rate of 0.19%. The authors concluded that the accuracy of cell-free DNA for trisomy 21 in twin pregnancies is similar to reports in singleton pregnancies and is superior to first-trimester combined testing or second-trimester screening using biochemical testing. It is worth noting that the cell-free DNA test was not carried out in the general population but in a mixture of low- and high-risk pregnancies, in which some of the participants had had another screening test before opting for cell-free DNA testing.
ACOG (Rose, 2020) provides the following recommendations regarding screening for fetal chromosomal abnormalities in multiple gestation pregnancies:
In a more recent position statement on cell-free DNA screening for Down syndrome in multiple pregnancies, the ISPD, based on moderate quality evidence, endorses first-trimester cell-free DNA screening for autosomal trisomies (13, 18 and 21) in twin pregnancies. The ISPD also indicates that cell-free DNA-based screening for common trisomies in twins provides higher positive predictive values among twin pregnancies compared with traditional serum and nuchal translucency-based screening in twins, but are associated with test failures (moderate quality evidence) (Palomaki, 2020).
Although rare, false positive test results have been observed and reported in the literature. It is also important to keep in mind that negative cell-free fetal DNA test results do not ensure an unaffected pregnancy. Additionally, a positive cell-free fetal DNA test result for aneuploidy does not determine if the trisomy is due to a translocation, which affects the risk of recurrence. For this reason, individuals with a positive test result should be referred for genetic counseling and should be offered invasive prenatal diagnosis for confirmation of test results.
Fetal Sex Determination
Prenatal fetal sex determination is generally performed for women who are at risk of having a child with a serious genetic disorder affecting a particular sex. This includes women who are carriers of X-linked genetic disorders such as Duchenne muscular dystrophy (DMD) and adrenoleukodystrohy (ALD) and where fetal sexing is employed to guide decisions about invasive testing. Prenatal fetal sex determination may also be performed for carriers of hemophilia, where it can inform management of labor and delivery of confirmed and ‘at risk’ male pregnancies. In addition, fetal sex determination is used for conditions associated with ambiguous development of the external genitalia, such as congenital adrenal hyperplasia (CAH), where treatment with maternal steroids early in pregnancy can reduce the level of virilization in female fetuses. Chorionic villus sampling from 11 weeks or amniocentesis from 15 weeks are invasive options which allow definitive genetic diagnosis, but both techniques carry a 1% risk of miscarriage. Invasive cytogenetic determination is considered the gold standard for ambiguous genitalia, X-linked conditions and singe-gene disorders such as CAH (Devaney, 2011; Heland, 2016; Hill, 2012; Lewis, 2012).
Traditionally, ultrasound has been the method used for fetal sex determination. Several authors have explored the test performance of fetal ultrasound for sex determination with varying results. Fetal sex determination can be performed by ultrasound as early as 11 weeks gestation, although not reliably (Chelli, 2009; Devaney, 2011; Odeh, 2009.
Non-invasive prenatal diagnosis (NIPD) using cell-free DNA is also being marketed to curious parents-to-be as a means of determining fetal sex for non-medical purposes. Currently, ultrasound examination is the standard non-invasive method of determining fetal sex. Use of NIPD using cell-free DNA for the purposes of sex determination for non-medical reasons is considered not medically necessary as information regarding the sex of the fetus which does not have any clinical impact of the health outcomes of the parent or fetus can be obtained via routine prenatal ultrasound when the intent is to identify fetal anomalies. ACOG acknowledges that some individuals may request cell-free DNA screening in order to obtain fetal sex information earlier than is possible with other methods such as ultrasound evaluation. ACOG recommends that individuals should be counseled regarding the limitations of cell-free DNA screening and advised that cell-free DNA screening also assesses the risk of other trisomies and if that information is not desired, the screening should not be performed (ACOG, 2015).
It is also worth noting, that although NIPD plays an important role in the non-invasive prenatal diagnosis of selected conditions, cell-free fetal DNA-based testing does not eliminate the need for ultrasound studies (Gregg, 2016).
In summary, NIPD for fetal sex determination provides an important alternative to cytogenetic determination (amniocentesis, chorionic villus sampling) and can improve the safety of medical care by reducing the need for invasive fetal diagnostic tests. The overall performance of noninvasive fetal sex determination using maternal blood can be high, provided that the blood sample is taken at a time during pregnancy when sufficient cell-free fetal DNA is present (7 weeks gestation or later). NIPD can feasibly be performed from as early as 7 weeks gestation, has been shown to be more than 99% accurate and, because it is non-invasive, does not carry the risk of miscarriage. Furthermore, NIPD has been estimated to reduce the need for invasive procedures by up to 50%. NIPD using cell-free DNA for sex determination can be useful in the clinical setting for early detection of fetuses at risk for sex-linked disorders which require follow-up testing. When used for fetal sex determination, NIPD offers several advantages over ultrasound and invasive testing. NIPD using cell-free fetal DNA is a reliable non-invasive means to determine fetal sex without incurring the risk of unintended fetal losses that is associated with invasive procedures. NIPD for fetal sex determination is not appropriate when it is performed solely for non-clinical purposes (such as when a fetus with a sex linked genetic defect is not suspected or to provide the parents with the convenience of knowing the gender of the fetus sooner than can be determined by a routine prenatal ultrasound) (ACOG, 2015; Allyse, 2015; Devaney, 2011; Lewis, 2012). It is important that individuals contemplating NIPD are adequately counseled so that they are equipped to make autonomous, informed decisions regarding whether to undergo NIPT and how to understand the results and limitations of such testing (ACOG, 2015; Allyse, 2015; Dondorp, 2015).
Fetal Sex Chromosome Aneuploidy (SCA) Screening
Sex chromosome disorders are part of a group of genetic conditions caused by an aberration in a sex chromosome in which there is missing or extra sex chromosome material. These numerical changes in the chromosomes interfere with normal sexual development. It has been estimated that SCAs occur in one of every 400 live births. The impact of fetal SCA on general health including psychosocial development varies. These aneuploidies are typically diagnosed postnatally with many individuals going undiagnosed until they seek medical care for fertility problems. SCAs are also sometimes diagnosed as a result of invasive karyotype testing of pregnant women at high risk for Down syndrome. NIPT is being explored as a screening tool to identify common sex chromosome aneuploidies including, but not limited to the following:
Currently, there is less peer-reviewed published evidence on the diagnostic performance of NIPTs for detecting fetal SCAs. Limited data indicate that NIPT has a lower accuracy for SCA than for trisomies 21 and 18. The sensitivity for sex chromosome abnormalities average 91% and have a sensitivity of greater than 99%, however, the values depend on the particular condition identified. The positive and negative predictive values for SCAs are dependent upon the particular condition identified. In general, the positive predictive value ranges from 20-40% for most of these conditions (ACOG, 2015).
The ESHG/ASHG (Dondorp, 2015) recommends against using cell-free DNA to screen for sex chromosomal abnormalities. In support of this recommendation, the authors provide a discussion of the following concerns. There is little information available about women’s preferences about prenatal screening for SCAs and if, when the prenatal screening for SCA have positive results, the women pursue confirmatory invasive testing. Inasmuch as the majority of prenatally identified SCAs do not lead to a termination of the pregnancy, consideration should be given to how active screening for these conditions impacts the children who are subsequently born with a suspected or confirmed SCA diagnosis. On the one hand, prenatal detection of SCAs may enhance the child’s quality of life by allowing early treatment of behavioral and health problems as well as timely fertility preservation. Alternatively, there are concerns about the potentially negative psychological impact (effect on parent-child interaction, self-esteem, and stigmatization) as a result of being born with a diagnosis that otherwise might never have been made in many cases (or only much later as a result of fertility problems). The authors also point out that screening for SCAs by NIPT will make it impossible to avoid providing information about fetal sex to women or couples who might want to use this for aborting fetuses based on gender.
Based on a systematic review of the evidence, the ACMG issued a strong recommendation (based on high certainty of evidence), favoring the use of non-invasive prenatal over traditional methods to screen for fetal sex chromosome aneuploidies in all individuals with a single or twin gestation pregnancy. The systematic review revealed that the screening performance for four common types of SCA (monosomy X, XXX, XXY, and XYY) was high, with the overall detection rate for any SCA being 99.6% (95% CI; 94.8%-100%) and specificity 99.8% (95% CI; 99.7%-99.9%). However, the authors point out that there were differences in PPVs across the different SCAs which ranged from 29.5% to 74.5% and the studies included in the review did not uniformly indicate the type of diagnostic testing used to confirm the SCA. Although the ACMG recommendations provide information on the clinical validity of SCA screening, the guideline does not specifically present evidence demonstrating the clinical utility (improved patient outcomes or change in clinical decision making) of cell-free fetal DNA-based screening for SCA.
At the time of this review, no direct comparative evidence was identified that demonstrated cell-free fetal DNA-based screening for SCA resulted in a change in clinical management. It is unclear what effect cell-free DNA-based screening for sex chromosome aneuploidies will have on net health outcomes.
Microdeletion Syndromes
NIPT using cell-free DNA is being researched as a tool to screen for microdeletions. Microdeletions (also referred to as submicroscopic deletions) are chromosomal deletions that are too small to be detected by conventional cytogenetic methods or microscopy. Microdeletions, in conjunction with microduplications, are collectively known as copy number variations (CNVs). CNVs can lead to disease development when the change in copy number of a dose-sensitive gene or genes disturbs the ability of the gene(s) to function and effects the volume of protein produced.
Several genomic disorders associated with microdeletion have been identified. Microdeletion syndromes have distinctive and, in many cases, serious clinical features, including cardiac anomalies, immune deficiency, palatal defects, and cognitive delay. While some microdeletions are inherited, other occur de novo. Microdeletion syndromes include, but are not limited to the following:
The joint position statement of the ESHG and the Social Issues Committee of the ASHG recommends against NIPT-based screening for chromosomal microdeletion syndromes and states the following:
Concerns have been raised that this expansion of the screening offer is based on proof of principle rather than validation studies, and that with the rarity of most of these microdeletion syndromes, the PPV is expected to be low. Multiple false positives as a result of screening for microdeletions will undermine the main achievement of NIPT in the context of prenatal screening: the significant reduction of the invasive testing rate. Depending on the resolution used for expanded NIPT, more of the recently identified smaller microdeletion (and duplication) syndromes may also be detected. Many of these are associated with generally milder phenotypes, whereas some may even be present in healthy individuals. With higher resolutions, variants may also be found of which the clinical significance is still unknown. Screening for these conditions and subsequent follow-up testing (also of the parents) will lead to information and counseling challenges, as well as burdening pregnant women or couples with difficult decision making (Dondorp, 2015).
The ACOG Committee Opinion on the use of cell-free DNA screening for fetal aneuploidy states the following:
Microdeletion syndromes occur sporadically or are due to other genetic mechanisms. Screening for these microdeletions has not been validated in clinical studies and the true sensitivity and specificity of this screening test is uncertain. Routine cell-free DNA screening for microdeletion syndromes should not be performed (ACOG, 2015).
The 2022 recommendation from ACMG does not recommend using cell-free DNA for routine screening of the general population for chromosomal microdeletion syndromes at this time due to insufficient evidence and undetermined clinical utility (Dugan, 2022).
The clinical implications of prenatal testing for microdeletions are not clearly defined. It has not yet been determined whether prenatal diagnosis is appropriate given the inherent complexity of accurately predicting the phenotype for the numerous of microdeletion syndromes.
Single-gene Disorders
NIPT has not yet been proven efficacious in detecting other chromosomal abnormalities or single-gene disorders. NSGC recommends that pretest counseling for NIPT include information about the disorders that it may detect, its limitations in detecting these conditions, and its unproven role in detecting other conditions (Devers, 2013).
With regards to the use of cell-free fetal DNA for singe-gene disorders, ACOG’s Practice Advisory on Cell-free DNA to Screen for Single-Gene Disorders contains the following guidance:
The continued innovation in cell-free technology combined with the desire for a maternal blood test to predict the risk for fetal genetic disorders during a pregnancy has broadened the application of cell-free DNA screening beyond aneuploidy to single-gene disorders. Examples of single-gene disorders include various skeletal dysplasias, sickle cell disease and cystic fibrosis. Although this technology is available clinically and marketed as a single-gene disorder prenatal screening option for obstetric care providers to consider in their practice, often in presence of advanced paternal age, there has not been sufficient data to provide information regarding accuracy and positive and negative predictive value in the general population. For this reason, single-gene cell-free DNA screening is not currently recommended in pregnancy (ACOG, 2019).
Zygosity
Prenatal testing for twin zygosity using cell-free fetal DNA is being explored as a tool to inform decisions about early surveillance for twin-to-twin transfusion syndrome and other monochorionic twin-related abnormalities.
Leung et al. (2013) reported the results of a study that assessed the ability of cell-free fetal DNA to provide an individualized assessment of trisomies in twins, as well as fetal fraction and zygosity. MPS was conducted on 11 singleton pregnancies and 8 twin pregnancies, (6 of which had euploid twins, and 2 of which were known to have 1 aneuploid twin). With regards to the zygosity results, zygosity was determined using an algorithm to analyze the ratio of fetal-specific allele to major allele for specific loci. For identical twins it is supposed that the fetal fraction calculated would be the same across all loci, but for fraternal twins, the fetal fraction would vary across various loci. Using this information, the algorithm correctly categorized 4 twin pregnancies as identical, and the other 2 twin pregnancies as fraternal. The authors concluded that noninvasive prenatal assessment of fetal chromosomal aneuploidy for twin pregnancies can be achieved with the use of massively parallel sequencing of cell-free DNA in maternal blood.
In another study, Qu and colleagues (2013) explored the use of MPS of maternal plasma DNA for the noninvasive prenatal assessment of the zygosities of twin pregnancies. Researchers recruited a total of eight twin pregnancies, including four dichorionic diamniotic twins, three monochorionic diamniotic twins, and one monochorionic monoamniotic. Maternal peripheral blood samples were collected on a single occasion between 19 and 30 weeks of gestation prior to any invasive obstetrics procedures. At the time of delivery, cord blood was collected separately from each twin. Microarray genotyping was used to evaluate the cell-free fetal DNA, and regions of DNA heterozygosity were evaluated within each sample. Slight regional variation was anticipated for identical twins, while greater variation was expected for fraternal twins. This method correctly identified the monozygotic and dizygotic twin pregnancies, and in dizygotic twins could determine the contribution of each twin to the fetal fraction.
Norwitz and colleagues (2019) analyzed maternal plasma cell-free DNA samples from twin pregnancies in a prospective blinded study to evaluate a single-nucleotide polymorphism (SNP)-based NIPT for zygosity, fetal sex, and aneuploidy. Zygosity was assessed by looking for either one or two fetal genome complements, fetal sex was assessed by evaluating Y-chromosome loci, and aneuploidy was evaluated through SNP ratios. Zygosity was correctly forecasted in 100% of cases (93/93; 95% CI, 96.1%-100%). Individual fetal sex for both twins was also predicted with 100% accuracy (102/102; 95% weighted CI, 95.2%-100%). Every case with copy number truth were also correctly identified. Researchers calculated the dizygotic aneuploidy sensitivity to be 100% (10/10; 95% CI, 69.2%-100%), and overall specificity was 100% (96/96; 95% weighted CI, 94.8%-100%). The mean fetal fraction (FF) of monozygotic twins (n=43) was 13.0% (standard deviation (SD), 4.5%); for dizygotic twins (n=79), the mean lower fetal fraction was 6.5% (SD, 3.1%) and the mean higher fetal fraction was 8.1% (SD, 3.5%). The authors concluded SNP-based NIPT for zygosity is of value in those instances when chorionicity is uncertain or anomalies are identified. Limitations of this study include but are not necessarily limited to the use of different methods to confirm zygosity and a lack of information on timing of the index test.
Currently there is insufficient evidence to support the use of NIPT for twin zygosity. Additional studies that confirm the clinical validity of the test are needed as well as prospective studies that demonstrate how the data provided by the test impacts clinical management or results in improved patient outcomes.
Genetic Counseling
While several organizations have emphasized the importance of genetic counseling for individuals undergoing cell-free DNA testing, some authors have cautioned that due in part to the sheer volume of the pregnant individuals, the rapid uptake of maternal plasma cell-free DNA-based screening, and the exploration of cell-free DNA testing for other indications, there are not enough resources to make this practical for the general pregnancy population (Kloza, 2015; Meredith, 2016; Piechan, 2016). In order to assist healthcare professionals facilitate informed decision-making, Sachs and colleagues (2015) have provided a summary of the key points to be included in discussions with patients who are considering NIPT. Genetic counseling for individuals undergoing fetal aneuploidy screening is likely to include information on several key points, including but not necessarily limited to the following:
Individuals with positive non-invasive cell-free DNA screening results should undergo confirmatory diagnostic prenatal testing (such as amniocentesis or chorionic villus sampling) (ACOG, 2015; ACOG, 2016; ACOG, 2020; Gregg, 2016; Dugan, 2022).
Laboratory Developed Tests
There are currently several commercially available laboratory developed tests which analyze circulating cell-free DNA to identify increased representation of various chromosomes. These tests include but are not necessarily limited to the following:
Definitions |
Adrenal cortex: The outer layer of the adrenal gland(s).
Aneuploidy: A condition where there are either fewer or more than the normal number of chromosomes present in cells of a person's body.
Camptodactyly: Permanently closed (flexed) fingers.
Chorionic villus sampling: A prenatal test to detect birth defects which involves retrieval and examination of tissue from the chorionic villi (placenta).
Circulating cell-free fetal DNA (ccffDNA): The result of the breakdown of fetal cells (mostly placental) which clears from the maternal system within hours.
Euploidy: The state of having a balanced set of chromosomes.
Fetal fraction: A measurement of the amount of cell-free DNA material in the maternal blood that is of fetal origin.
Holoprosencephaly: Failure of the forebrain to divide into lobes or hemispheres.
Hypotonia: Weak muscle tone.
Microcephaly: A small head.
Micrognathia: A small jaw.
Monosomy: The absence of one chromosome of the usual pair to (two) chromosomes.
Monosomy X: A congenital disorder caused by the absence of one X sex chromosome (the individual has only one X sex chromosome rather than the usual pair [either two Xs or one X and one Y sex chromosome]); also called Turner syndrome and monosomy XO.
Myelin: The fatty covering that insulates nerves in the spinal cord and brain.
NIPT: Non-invasive prenatal test.
Pectus carinatum: An unusual shaped chest.
Polydactyly: Extra fingers or toes.
Robertsonian translocations: Chromosomal rearrangement in humans that occurs in five acrocentric (long and short arm) chromosome pairs (13, 14, 15, 21, and 22). These translocations are also called “whole-arm” or centric-fusion translocations. During a Robertsonian translocation, the chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere. The short arms also join, but usually contain nonessential genes and are usually lost within a few cell divisions.
Rocker-bottom feet: A rigid flatfoot deformity.
Sex chromosome aneuploidy: A group of genetic conditions caused by an abnormal sex chromosome aberration in which there is missing or extra sex chromosome material.
Trisomy: The presence of three chromosomes, rather than the usual pair of (two) chromosomes.
Trisomy X: A congenital disorder caused by having an extra copy of chromosome X; also called Triple X syndrome.
Trisomy 13: A congenital disorder caused by having an extra copy of chromosome 13; also called Patau syndrome.
Trisomy 18: A congenital disorder caused by having an extra copy of chromosome 18; also called Edwards syndrome.
Trisomy 21: A congenital disorder caused by having an extra copy of chromosome 21; also called Down syndrome.
Vanishing twin: A fetus in a multi-gestation pregnancy which spontaneously dies in utero during early pregnancy.
Virilization: The development of male physical characteristics (such as body hair, deep voice and muscle bulk) in a female or at an unusually early age in a boy, typically due to excess androgen production.
Zygosity: The genetic identity of each twin in the pregnancy.
References |
Peer Reviewed Publications:
Government Agency, Medical Society, and Other Authoritative Publications:
Websites for Additional Information |
Index |
Down syndrome
Fetal sex chromosome aneuploidy
Fetal sex determination
Harmony Prenatal Test
Massively parallel DNA sequencing
MaterniT Genome
MaterniT21
MaterniT21 Plus
Microdeletions
Monosomy X
Monosomy XO
Panorama Prenatal Test
Patau syndrome
Triple X syndrome
Trisomy X
Trisomy 13
Trisomy 18
Trisomy 21
Turner syndrome
verifi Prenatal Test
VisibiliT Prenatal Test
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History |
Status | Date | Action |
Reviewed | 02/16/2023 | Medical Policy & Technology Assessment Committee (MPTAC) review. Updated Discussion/General Information, References, Websites for Additional Information and History sections. |
| 06/29/2022 | Updated Coding section with 07/01/2022 CPT changes; added CPT 0327U. |
Revised | 02/17/2022 | MPTAC review. Revised the not medically necessary clinical indications to include testing for single-gene disorders or to determine twin zygosity. Updated References and History sections. Updated Coding section to add CPT code 0060U. |
| 12/29/2021 | Updated Coding section with CPT changes; removed 0168U deleted 09/30/2021. |
Revised | 02/11/2021 | MPTAC review. Expanded the Clinical Indications to include cell-free DNA testing for fetal aneuploidy (trisomy 13, 18, and 21) in women with a current single or twin gestation pregnancy. Also added criterion indicating cell-free fetal DNA-based prenatal screening for fetal aneuploidy (trisomy 13, 18, and 21) in twin pregnancies considered not medically necessary when the current pregnancy is affected by fetal demise, vanishing twin, or one or more anomaly detected in one or both of the twins. Updated Coding, Discussion/General Information, Definitions, References and Websites for Additional Information sections. |
New | 11/05/2020 | MPTAC review. Initial document development. Moved content of GENE.00026 Cell-Free Fetal DNA-Based Prenatal Testing to a new clinical utilization management guideline document with the same title. |
Federal and State law, as well as contract language, and Medical Policy take precedence over Clinical UM Guidelines. We reserve the right to review and update Clinical UM Guidelines periodically. Clinical guidelines approved by the Medical Policy & Technology Assessment Committee are available for general adoption by plans or lines of business for consistent review of the medical necessity of services related to the clinical guideline when the plan performs utilization review for the subject. Due to variances in utilization patterns, each plan may choose whether to adopt a particular Clinical UM Guideline. To determine if review is required for this Clinical UM Guideline, please contact the customer service number on the member's card.
Alternatively, commercial or FEP plans or lines of business which determine there is not a need to adopt the guideline to review services generally across all providers delivering services to Plan’s or line of business’s members may instead use the clinical guideline for provider education and/or to review the medical necessity of services for any provider who has been notified that his/her/its claims will be reviewed for medical necessity due to billing practices or claims that are not consistent with other providers, in terms of frequency or in some other manner.
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